PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02600.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 320aa    MW: 35112.8 Da    PI: 5.4414
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02600.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.22.3e-32261172102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc02600.1.g00030.1.am.mk  26 FVAKTYQMVCDPRTDALVRWGKENNSFVVVDPAGFSQLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFA 97 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   h+sF +g+ +ll ++ r+k+
  Zmw_sc02600.1.g00030.1.am.mk  98 HESFLRGQMHLLPRVVRRKK 117
                                   **************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3521109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-162649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-167789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGLHTELAL GLIGFGGGAQ LQTAPFVAKT YQMVCDPRTD ALVRWGKENN SFVVVDPAGF  60
SQLLLPCFFK HSNFSSFVRQ LNTYGFRKVH PDRWEFAHES FLRGQMHLLP RVVRRKKRGE  120
GGASCSAPAG GGGGLANLGD AHRPLDEGND EEREALAEEV QRLWQEQATI GEELARMSRR  180
LQATERQPDQ LMSFLARLAE DPDGVTRNLM EQAAEKKRRR LQLDSAPVVS PVPPPPLPPA  240
APPPLLALGG AAVDCDDWQW AEQKPAILLP SFDPLSSRCE VQQVPDFAAG RDVGAGVITF  300
DRDTAAETPF PFCLLGQGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-221311516129Heat shock factor protein 1
5d5v_B8e-221311516129Heat shock factor protein 1
5d5v_D8e-221311516129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216220KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969221.11e-137PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-121HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLK3XK691e-137K3XK69_SETIT; Uncharacterized protein
STRINGSi002292m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394